1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:4.23e-26:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS03335
Response regulator, unclassified
Bacillus wiedmannii · GCF_001044745
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001044745#TU65_RS03335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 230 aa (67.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_11#2
171-212 aa · 42 aa · 18.3% of protein
Raw token
HTH_11:171:0.0000907:212:43:52- Raw architecture: Response_reg:7:4.23e-26:119:113:111#HTH_11:171:0.0000907:212:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001044745::NZ_LABO01000011.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12788-13480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_03335RefSeq proteinWP_048541596.1
Context group ID
GCF_001044745::NZ_LABO01000011.1::G00009Context members
TU65_RS03335
Partner locus tags
TU65_RS03335
Partner old locus tags
TU65_03335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048541596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS03335Primary locus identifier stored in the genes table.
Old locus tagTU65_03335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000011.1Sequence record reported by the local genomic context database.
Genomic interval12 788-13 480 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 788-13 480 ntGCF_001044745::NZ_LABO01000011.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000011.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span12 788-13 480 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 788 nt13 480 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TU65_RS03335GCF_001044745#TU65_RS03335
RRunclassifiedCurrent focus
12 788-13 480 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS03335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1204712
Simplified PFAM architecture for RROC_1204712
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[179-225]
- Domain count: 2
- Matched identifier: RROC_1204712
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HTH_64 179-225 ; HTH_64 179-225
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS03335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key