1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000417:269:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS01245
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS01245Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 502 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.000000000000011:347:68:643 HATPase_c#3
394-502 aa · 109 aa · 21.7% of protein
Raw token
HATPase_c:394:6.23e-21:502:110:109- Raw architecture: HAMP:205:0.00000000417:269:68:69#HisKA:280:0.000000000000011:347:68:64#HATPase_c:394:6.23e-21:502:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17897-20090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_01245RefSeq proteinWP_048541097.1
Context group ID
GCF_001044745::NZ_LABO01000006.1::G00004Context members
TU65_RS01245TU65_RS01250
Partner locus tags
TU65_RS01245TU65_RS01250
Partner old locus tags
TU65_01245TU65_01250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048541097.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5IAG6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5IAG6_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS01245Primary locus identifier stored in the genes table.
Old locus tagTU65_01245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000006.1Sequence record reported by the local genomic context database.
Genomic interval17 897-19 405 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 897-20 090 ntGCF_001044745::NZ_LABO01000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000006.1All displayed genes belong to this local TCS context.
Neighborhood span17 897-20 090 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 897 nt20 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS01245GCF_001044745#TU65_RS01245
HKClassicCurrent focus
17 897-19 405 nt · Reverse (-)
TU65_RS01250GCF_001044745#TU65_RS01250
RROmpR
19 389-20 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS01245The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464281
Simplified PFAM architecture for HKOC_1464281
PFAM domain coverage: 220 / 502 aa (43.8%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-268] | HisKA[280-346] | HATPase_c[394-501]
- Domain count: 3
- Matched identifier: HKOC_1464281
- Positioned domains: HAMP 224-268 ; HisKA 280-346 ; HATPase_c 394-501
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS01245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key