1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.000000000689:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS00550
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS00550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 452 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-295 aa · 63 aa · 13.9% of protein
Raw token
HisKA:233:0.0000000000000109:295:63:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:6.14e-31:449:108:109- Raw architecture: HAMP:158:0.000000000689:229:72:69#HisKA:233:0.0000000000000109:295:63:64#HATPase_c:343:6.14e-31:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15431-17476Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_00550RefSeq proteinWP_048540901.1
Context group ID
GCF_001044745::NZ_LABO01000004.1::G00001Context members
TU65_RS00550TU65_RS00555
Partner locus tags
TU65_RS00550TU65_RS00555
Partner old locus tags
TU65_00550TU65_00555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048540901.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5IFB1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5IFB1_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS00550Primary locus identifier stored in the genes table.
Old locus tagTU65_00550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000004.1Sequence record reported by the local genomic context database.
Genomic interval15 431-16 789 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 431-17 476 ntGCF_001044745::NZ_LABO01000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000004.1All displayed genes belong to this local TCS context.
Neighborhood span15 431-17 476 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 431 nt17 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS00550GCF_001044745#TU65_RS00550
HKClassicCurrent focus
15 431-16 789 nt · Reverse (-)
TU65_RS00555GCF_001044745#TU65_RS00555
RROmpR
16 793-17 476 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS00550The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1938338
Simplified PFAM architecture for HKOC_1938338
PFAM domain coverage: 346 / 452 aa (76.5%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[30-151] | HAMP[176-228] | HisKA[234-297] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1938338
- Positioned domains: ArlS_N 30-151 ; HAMP 176-228 ; HisKA 234-297 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS00550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key