1 Response_reg#1
3-117 aa · 115 aa · 57.2% of protein
Raw token
Response_reg:3:2.84e-19:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU50_RS09355
Response regulator NarL family
Bacillus wiedmannii · GCF_001044575
ClassRRTypeNarLLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001044575#TU50_RS09355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 201 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-190 aa · 56 aa · 27.9% of protein
Raw token
HTH_LUXR:135:2.37e-16:190:56:58- Raw architecture: Response_reg:3:2.84e-19:117:116:111#HTH_LUXR:135:2.37e-16:190:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001044575::NZ_JYPF01000002.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span613968-614573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU50_09385RefSeq proteinWP_116891148.1
Context group ID
GCF_001044575::NZ_JYPF01000002.1::G00026Context members
TU50_RS09355
Partner locus tags
TU50_RS09355
Partner old locus tags
TU50_09385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_116891148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU50_RS09355Primary locus identifier stored in the genes table.
Old locus tagTU50_09385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYPF01000002.1Sequence record reported by the local genomic context database.
Genomic interval613 968-614 573 nt606 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span613 968-614 573 ntGCF_001044575::NZ_JYPF01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044575::NZ_JYPF01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYPF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span613 968-614 573 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
613 968 nt614 573 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TU50_RS09355GCF_001044575#TU50_RS09355
RRNarLCurrent focus
613 968-614 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044575#TU50_RS09355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2123395
Simplified PFAM architecture for RROC_2123395
PFAM domain coverage: 169 / 201 aa (84.1%)
1 aa201 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-117] | GerE[136-189]
- Domain count: 2
- Matched identifier: RROC_2123395
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; GerE 136-189 ; GerE 136-189
Cluster members and taxonomy
Representative gene: GCF_001044575#TU50_RS09355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044575
AssemblyASM104457v1 · Scaffoldhaploid
Genome composition5 523 305 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key