1 HisKA_3#1
207-271 aa · 65 aa · 14.8% of protein
Raw token
HisKA_3:207:0.0000000000000119:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBKW_RS06820
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 · GCF_001042615
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001042615#BBKW_RS06820Stable P2CS identifier used across views.
GenomeGCF_001042615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 440 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
317-426 aa · 110 aa · 25.0% of protein
Raw token
HATPase_c:317:0.00000000161:426:111:109- Raw architecture: HisKA_3:207:0.0000000000000119:271:65:68#HATPase_c:317:0.00000000161:426:111:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001042615::NZ_AP012327.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1565335-1567316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBKW_1346RefSeq proteinWP_033500535.1
Context group ID
GCF_001042615::NZ_AP012327.1::G00011Context members
BBKW_RS06815BBKW_RS06820
Partner locus tags
BBKW_RS06815BBKW_RS06820
Partner old locus tags
BBKW_1345BBKW_1346
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033500535.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBKW_RS06820Primary locus identifier stored in the genes table.
Old locus tagBBKW_1346Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012327.1Sequence record reported by the local genomic context database.
Genomic interval1 565 994-1 567 316 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 565 335-1 567 316 ntGCF_001042615::NZ_AP012327.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001042615::NZ_AP012327.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012327.1All displayed genes belong to this local TCS context.
Neighborhood span1 565 335-1 567 316 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 565 335 nt1 567 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBKW_RS06815GCF_001042615#BBKW_RS06815
RRNarL
1 565 335-1 565 994 nt · Reverse (-)
BBKW_RS06820GCF_001042615#BBKW_RS06820
HKClassicCurrent focus
1 565 994-1 567 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741605#BKAS_RS00550Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2072339
Simplified PFAM architecture for HKOC_2072339
PFAM domain coverage: 66 / 440 aa (15.0%)
1 aa440 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[207-272]
- Domain count: 1
- Matched identifier: HKOC_2072339
- Positioned domains: HisKA_3 207-272
Cluster members and taxonomy
Representative gene: GCF_000741605#BKAS_RS00550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 460 · GCF_001042615
AssemblyASM104261v1 · Complete Genomehaploid
Genome composition2 337 234 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key