1 Response_reg#1
2-92 aa · 91 aa · 46.2% of protein
Raw token
Response_reg:2:2e-27:92:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBKW_RS02945
Response regulator OmpR family
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 · GCF_001042615
ClassRRTypeOmpRLength197 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001042615#BBKW_RS02945Stable P2CS identifier used across views.
GenomeGCF_001042615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length197 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 197 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa197 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
124-196 aa · 73 aa · 37.1% of protein
Raw token
Trans_reg_C:124:0.0000000000000124:196:77:77- Raw architecture: Response_reg:2:2e-27:92:91:111#Trans_reg_C:124:0.0000000000000124:196:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001042615::NZ_AP012327.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span686726-688569Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001042615::NZ_AP012327.1::G00005Context members
BBKW_RS02940BBKW_RS02945
Partner locus tags
BBKW_RS02940BBKW_RS02945
Partner old locus tags
BBKW_0581
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_231858510.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1UMQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1UMQ6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBKW_RS02945Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AP012327.1Sequence record reported by the local genomic context database.
Genomic interval687 976-688 569 nt594 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span686 726-688 569 ntGCF_001042615::NZ_AP012327.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001042615::NZ_AP012327.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012327.1All displayed genes belong to this local TCS context.
Neighborhood span686 726-688 569 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
686 726 nt688 569 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBKW_RS02940GCF_001042615#BBKW_RS02940
HKClassic
686 726-687 913 nt · Reverse (-)
BBKW_RS02945GCF_001042615#BBKW_RS02945
RROmpRCurrent focus
687 976-688 569 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS02945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1814823
Simplified PFAM architecture for RROC_1814823
PFAM domain coverage: 182 / 218 aa (83.5%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1814823
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS02945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 460 · GCF_001042615
AssemblyASM104261v1 · Complete Genomehaploid
Genome composition2 337 234 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key