1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.04e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBCT_RS01310
Response regulator OmpR family
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 · GCF_001025195
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001025195#BBCT_RS01310Stable P2CS identifier used across views.
GenomeGCF_001025195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:2.83e-33:229:77:77- Raw architecture: Response_reg:4:2.04e-37:113:111:111#Trans_reg_C:153:2.83e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001025195::NZ_AP012325.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338096-340229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBCT_0258RefSeq proteinWP_003836074.1
Context group ID
GCF_001025195::NZ_AP012325.1::G00002Context members
BBCT_RS01305BBCT_RS01310
Partner locus tags
BBCT_RS01305BBCT_RS01310
Partner old locus tags
BBCT_0257BBCT_0258
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003836074.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V8PSL4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V8PSL4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBCT_RS01310Primary locus identifier stored in the genes table.
Old locus tagBBCT_0258Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012325.1Sequence record reported by the local genomic context database.
Genomic interval339 525-340 229 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span338 096-340 229 ntGCF_001025195::NZ_AP012325.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001025195::NZ_AP012325.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012325.1All displayed genes belong to this local TCS context.
Neighborhood span338 096-340 229 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 096 nt340 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBCT_RS01305GCF_001025195#BBCT_RS01305
HKClassic
338 096-339 442 nt · Forward (+)
BBCT_RS01310GCF_001025195#BBCT_RS01310
RROmpRCurrent focus
339 525-340 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS06805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047579
Simplified PFAM architecture for RROC_1047579
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1047579
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS06805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 552 · GCF_001025195
AssemblyASM102519v1 · Complete Genomereference genome · haploid
Genome composition2 079 525 bp · 56,0% GCBifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key