1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:7.8e-20:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBBR_RS01120
Response regulator NarL family
Bifidobacterium breve DSM 20213 = JCM 1192 · GCF_001025175
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001025175#BBBR_RS01120Stable P2CS identifier used across views.
GenomeGCF_001025175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.00000000000021:192:52:58- Raw architecture: Response_reg:1:7.8e-20:110:111:111#HTH_LUXR:141:0.00000000000021:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001025175::NZ_AP012324.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span288717-289319Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBBR_0217RefSeq proteinWP_003828121.1
Context group ID
GCF_001025175::NZ_AP012324.1::G00002Context members
BBBR_RS01120
Partner locus tags
BBBR_RS01120
Partner old locus tags
BBBR_0217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003828121.1Primary protein accession used for annex mappings.
UniProt accessionD4BM53Primary UniProt accession resolved in the annex database.
UniProt IDD4BM53_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBBR_RS01120Primary locus identifier stored in the genes table.
Old locus tagBBBR_0217Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012324.1Sequence record reported by the local genomic context database.
Genomic interval288 717-289 319 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span288 717-289 319 ntGCF_001025175::NZ_AP012324.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001025175::NZ_AP012324.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012324.1All displayed genes belong to this local TCS context.
Neighborhood span288 717-289 319 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
288 717 nt289 319 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBBR_RS01120GCF_001025175#BBBR_RS01120
RRNarLCurrent focus
288 717-289 319 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157165#B1K22_RS07455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114335
Simplified PFAM architecture for RROC_2114335
PFAM domain coverage: 162 / 203 aa (79.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-111] | GerE[144-195]
- Domain count: 2
- Matched identifier: RROC_2114335
- Positioned domains: Response_reg 2-111 ; GerE 144-195
Cluster members and taxonomy
Representative gene: GCF_900157165#B1K22_RS07455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 518 634 · GCF_001025175
AssemblyASM102517v1 · Complete Genomereference genome · haploid
Genome composition2 269 415 bp · 59,0% GCBifidobacterium breve DSM 20213 = JCM 1192
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key