Gene detail

FT4114_RS01890

Histidine kinase, Classic

Francisella tularensis subsp. tularensis WY-00W4114 · GCF_001011135

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_001011135#FT4114_RS01890Stable P2CS identifier used across views.

GenomeGCF_001011135Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterHKOC_2866064Run 6 · 32 sequences · id 100% · cov 80%

External referencesWP_003025142.1 · MIST4 FT4114_RS01890RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length323 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage159 / 323 aa (49.2%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa323 aa

Domain-by-domain annotation2 items

1 HisKA#1

116-170 aa · 55 aa · 17.0% of protein

Raw tokenHisKA:116:0.00000346:170:57:64

2 HATPase_c#2

219-322 aa · 104 aa · 32.2% of protein

Raw tokenHATPase_c:219:1.17e-23:322:104:109

Raw architecture: HisKA:116:0.00000346:170:57:64#HATPase_c:219:1.17e-23:322:104:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_001011135::NZ_CP009753.1::G00004

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span377382-379092Genomic interval covered by the local TCS group.

Identifiers

Old locus tagFT4114_01895RefSeq proteinWP_003025142.1

Context group IDGCF_001011135::NZ_CP009753.1::G00004

Context members

FT4114_RS01890FT4114_RS01895

Partner locus tags

FT4114_RS01890FT4114_RS01895

Partner old locus tags

FT4114_01895FT4114_01900

Partner protein IDs

WP_003025142.1 WP_003022431.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_003025142.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFT4114_RS01890Primary locus identifier stored in the genes table.

Old locus tagFT4114_01895Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP009753.1Sequence record reported by the local genomic context database.

Genomic interval377 382-378 353 nt972 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span377 382-379 092 ntGCF_001011135::NZ_CP009753.1::G00004

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_001011135::NZ_CP009753.1::G00004

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP009753.1All displayed genes belong to this local TCS context.

Neighborhood span377 382-379 092 nt1 711 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

377 382 nt379 092 nt

+-FT4114_RS01890 FT4114_RS01895

Neighborhood gene cards

2 genes in the current local neighborhood.

FT4114_RS01890GCF_001011135#FT4114_RS01890

HKClassicCurrent focus

377 382-378 353 nt · Reverse (-)

Old locus FT4114_01895RefSeq WP_003025142.1

Open current gene

FT4114_RS01895GCF_001011135#FT4114_RS01895

RROmpR

378 403-379 092 nt · Reverse (-)

Old locus FT4114_01900RefSeq WP_003022431.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2866064HK

Run 632 sequencesid 100%cov 80%

PFAM HATPase_c

Representative GCF_000016105#FTW_RS01880

Selected clusterHKOC_2866064Run 6 · HK · 32 sequences

Representative sequenceGCF_000016105#FTW_RS01880Use this link to inspect the representative gene detail.

PFAM architectureHATPase_c1 domain in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_2866064

Simplified PFAM architecture for HKOC_2866064

PFAM domain coverage: 105 / 323 aa (32.5%)

1 aa323 aa

HATPase_c

Simplified architecture: HATPase_c
Raw architecture: HATPase_c[218-322]
Domain count: 1
Matched identifier: HKOC_2866064
Positioned domains: HATPase_c 218-322

Cluster members and taxonomy

Representative gene: GCF_000016105#FTW_RS01880

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 133 671 · GCF_001011135

AssemblyASM101113v1 · Complete Genomehaploid

Genome composition1 899 252 bp · 32,5% GCFrancisella tularensis subsp. tularensis WY-00W4114

Signal transduction countsGenes 5 · HK 3 · RR 2CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search HK genes NCBI assembly files

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Preview from the same derived genome key