1 Response_reg#1
6-114 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:6:2.95e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4147_RS11990
Response regulator OmpR family
Bacillus wiedmannii · GCF_001008655
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001008655#B4147_RS11990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:154:6.13e-34:231:78:77- Raw architecture: Response_reg:6:2.95e-34:114:110:111#Trans_reg_C:154:6.13e-34:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001008655::NZ_LCYN01000009.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span319965-322421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4147_3181RefSeq proteinWP_000283856.1
Context group ID
GCF_001008655::NZ_LCYN01000009.1::G00010Context members
B4147_RS11990B4147_RS11995
Partner locus tags
B4147_RS11990B4147_RS11995
Partner old locus tags
B4147_3181B4147_3182
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000283856.1Primary protein accession used for annex mappings.
UniProt accessionA0A0G8CDY5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0G8CDY5_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4147_RS11990Primary locus identifier stored in the genes table.
Old locus tagB4147_3181Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LCYN01000009.1Sequence record reported by the local genomic context database.
Genomic interval319 965-320 669 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span319 965-322 421 ntGCF_001008655::NZ_LCYN01000009.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001008655::NZ_LCYN01000009.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LCYN01000009.1All displayed genes belong to this local TCS context.
Neighborhood span319 965-322 421 nt2 457 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 965 nt322 421 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4147_RS11990GCF_001008655#B4147_RS11990
RROmpRCurrent focus
319 965-320 669 nt · Forward (+)
B4147_RS11995GCF_001008655#B4147_RS11995
HKClassic
320 679-322 421 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291375#IEI_RS19895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048160
Simplified PFAM architecture for RROC_1048160
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1048160
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000291375#IEI_RS19895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001008655
AssemblyASM100865v1 · Scaffoldhaploid
Genome composition5 749 457 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 126 · HK 67 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key