1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:0.00000000000002:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPSEU7765_RS00340
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_000940535
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000940535#BPSEU7765_RS00340Stable P2CS identifier used across views.
GenomeGCF_000940535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-211 aa · 56 aa · 25.7% of protein
Raw token
HTH_LUXR:156:1.51e-17:211:56:58- Raw architecture: Response_reg:13:0.00000000000002:126:115:111#HTH_LUXR:156:1.51e-17:211:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000940535::NZ_CDPW01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81032-81688Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000940535::NZ_CDPW01000001.1::G00001Context members
BPSEU7765_RS00340
Partner locus tags
BPSEU7765_RS00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_072043190.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPSEU7765_RS00340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CDPW01000001.1Sequence record reported by the local genomic context database.
Genomic interval81 032-81 688 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 032-81 688 ntGCF_000940535::NZ_CDPW01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000940535::NZ_CDPW01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CDPW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 032-81 688 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 032 nt81 688 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPSEU7765_RS00340GCF_000940535#BPSEU7765_RS00340
RRNarLCurrent focus
81 032-81 688 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000940535#BPSEU7765_RS00340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1814984
Simplified PFAM architecture for RROC_1814984
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1814984
- Positioned domains: Response_reg 13-125 ; Response_reg 13-125 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_000940535#BPSEU7765_RS00340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_000940535
AssemblyBPSEU7765_v1 · Contighaploid
Genome composition2 254 339 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 10 · RR 13CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key