1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:2.06e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF630_RS02455
Response regulator OmpR family
Clostridioides difficile 630 · GCF_000932055
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000932055#CDIF630_RS02455Stable P2CS identifier used across views.
GenomeGCF_000932055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:8.59e-30:226:77:77- Raw architecture: Response_reg:4:2.06e-33:113:111:111#Trans_reg_C:150:8.59e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000932055::NZ_CP010905.2::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span443730-445333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF630_00495RefSeq proteinWP_011860756.1
Context group ID
GCF_000932055::NZ_CP010905.2::G00005Context members
CDIF630_RS02450CDIF630_RS02455
Partner locus tags
CDIF630_RS02450CDIF630_RS02455
Partner old locus tags
CDIF630_00494CDIF630_00495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011860756.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TL00Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TL00_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF630_RS02455Primary locus identifier stored in the genes table.
Old locus tagCDIF630_00495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010905.2Sequence record reported by the local genomic context database.
Genomic interval444 641-445 333 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span443 730-445 333 ntGCF_000932055::NZ_CP010905.2::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000932055::NZ_CP010905.2::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010905.2All displayed genes belong to this local TCS context.
Neighborhood span443 730-445 333 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
443 730 nt445 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF630_RS02450GCF_000932055#CDIF630_RS02450
HKClassic
443 730-444 527 nt · Reverse (-)
CDIF630_RS02455GCF_000932055#CDIF630_RS02455
RROmpRCurrent focus
444 641-445 333 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02385Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199659
Simplified PFAM architecture for RROC_1199659
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1199659
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02385
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 63 total members. Page 1 / 2.
GCF_000009205#CD630_RS02385 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 272 563 · GCF_000932055
AssemblyASM93205v2 · Complete Genomehaploid
Genome composition4 274 782 bp · 29,0% GCClostridioides difficile 630
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key