1 Response_reg#1
1-100 aa · 100 aa · 30.1% of protein
Raw token
Response_reg:1:1.15e-17:100:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS18960
Response regulator, unclassified
Anaerostipes hadrus · GCF_000876135
ClassRRTypeunclassifiedLength332 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000876135#TZ59_RS18960Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHpt
Protein length332 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 332 aa (55.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa332 aa
Domain-by-domain annotation2 items
2 Hpt#2
156-238 aa · 83 aa · 25.0% of protein
Raw token
Hpt:156:0.000000021:238:83:84- Raw architecture: Response_reg:1:1.15e-17:100:100:111#Hpt:156:0.000000021:238:83:84
- Domain description: 1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000876135::NZ_JYFK01000012.1::G00008
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span18381-19984Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000012.1::G00008Context members
TZ59_RS18960TZ59_RS05505
Partner locus tags
TZ59_RS18960TZ59_RS05505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_420313709.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS18960Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000012.1Sequence record reported by the local genomic context database.
Genomic interval18 381-19 376 nt996 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 381-19 984 ntGCF_000876135::NZ_JYFK01000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000012.1All displayed genes belong to this local TCS context.
Neighborhood span18 381-19 984 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 381 nt19 984 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TZ59_RS18960GCF_000876135#TZ59_RS18960
RRunclassifiedCurrent focus
18 381-19 376 nt · Forward (+)
TZ59_RS05505GCF_000876135#TZ59_RS05505
RRNarL
19 535-19 984 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS18960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Hpt2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0517549
Simplified PFAM architecture for RROC_0517549
PFAM domain coverage: 163 / 332 aa (49.1%)
1 aa332 aa
Response_regHpt
- Simplified architecture: Response_reg + Hpt
- Raw architecture: Response_reg[3-98] | Hpt[157-223]
- Domain count: 2
- Matched identifier: RROC_0517549
- Positioned domains: Response_reg 3-98 ; Response_reg 3-98 ; Hpt 157-223 ; Hpt 157-223
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS18960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key