1 HAMP#1
173-240 aa · 68 aa · 13.8% of protein
Raw token
HAMP:173:0.00000000000000123:240:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS09455
Histidine kinase, Classic
Anaerostipes hadrus · GCF_000876135
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000876135#TZ59_RS09455Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 494 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-333 aa · 68 aa · 13.8% of protein
Raw token
HisKA:266:0.0000000000000017:333:68:643 HATPase_c#3
377-485 aa · 109 aa · 22.1% of protein
Raw token
HATPase_c:377:1.28e-16:485:112:109- Raw architecture: HAMP:173:0.00000000000000123:240:68:69#HisKA:266:0.0000000000000017:333:68:64#HATPase_c:377:1.28e-16:485:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000876135::NZ_JYFK01000025.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21653-23814Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000025.1::G00013Context members
TZ59_RS09455TZ59_RS09460
Partner locus tags
TZ59_RS09455TZ59_RS09460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044923539.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ3JGX5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ3JGX5_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS09455Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000025.1Sequence record reported by the local genomic context database.
Genomic interval21 653-23 137 nt1 485 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 653-23 814 ntGCF_000876135::NZ_JYFK01000025.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000025.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000025.1All displayed genes belong to this local TCS context.
Neighborhood span21 653-23 814 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 653 nt23 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TZ59_RS09455GCF_000876135#TZ59_RS09455
HKClassicCurrent focus
21 653-23 137 nt · Reverse (-)
TZ59_RS09460GCF_000876135#TZ59_RS09460
RROmpR
23 134-23 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS09455The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1509957
Simplified PFAM architecture for HKOC_1509957
PFAM domain coverage: 224 / 494 aa (45.3%)
1 aa494 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-240] | HisKA[266-331] | HATPase_c[378-484]
- Domain count: 3
- Matched identifier: HKOC_1509957
- Positioned domains: HAMP 190-240 ; HisKA 266-331 ; HATPase_c 378-484
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key