1 Response_reg#1
7-120 aa · 114 aa · 41.9% of protein
Raw token
Response_reg:7:0.000000000381:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS06410
Response regulator Spo0A family
Anaerostipes hadrus · GCF_000876135
ClassRRTypeSpo0ALength272 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000876135#TZ59_RS06410Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 272 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-263 aa · 104 aa · 38.2% of protein
Raw token
Spo0A_C:160:2.78e-62:263:104:104- Raw architecture: Response_reg:7:0.000000000381:120:115:111#Spo0A_C:160:2.78e-62:263:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000876135::NZ_JYFK01000014.1::G00009
Group size33 locus tags listed below.
HK / RR0 / 3Counts resolved for the local TCS neighborhood.
Context span42750-45300Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000014.1::G00009Context members
TZ59_RS06405TZ59_RS06410TZ59_RS06415
Partner locus tags
TZ59_RS06405TZ59_RS06410TZ59_RS06415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008392809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS06410Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000014.1Sequence record reported by the local genomic context database.
Genomic interval43 634-44 473 nt840 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 750-45 300 ntGCF_000876135::NZ_JYFK01000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000014.1All displayed genes belong to this local TCS context.
Neighborhood span42 750-45 300 nt2 551 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 750 nt45 300 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
TZ59_RS06405GCF_000876135#TZ59_RS06405
RRSpo0A
42 750-43 565 nt · Reverse (-)
TZ59_RS06410GCF_000876135#TZ59_RS06410
RRSpo0ACurrent focus
43 634-44 473 nt · Reverse (-)
TZ59_RS06415GCF_000876135#TZ59_RS06415
RRSpo0A
44 494-45 300 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS01525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0609881
Simplified PFAM architecture for RROC_0609881
PFAM domain coverage: 217 / 272 aa (79.8%)
1 aa272 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[160-263]
- Domain count: 2
- Matched identifier: RROC_0609881
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 160-263 ; Spo0A_C 160-263
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS01525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key