1 HisKA#1
113-179 aa · 67 aa · 10.8% of protein
Raw token
HisKA:113:1.66e-16:179:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS01320
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_000876135
ClassHKTypeHybridLength623 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000876135#TZ59_RS01320Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length623 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 623 aa (66.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa623 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
226-340 aa · 115 aa · 18.5% of protein
Raw token
HATPase_c:226:2.18e-30:340:115:1093 Response_reg#3
360-476 aa · 117 aa · 18.8% of protein
Raw token
Response_reg:360:6.19e-19:476:117:1114 Response_reg#4
504-620 aa · 117 aa · 18.8% of protein
Raw token
Response_reg:504:3.07e-29:620:117:111- Raw architecture: HisKA:113:1.66e-16:179:67:64#HATPase_c:226:2.18e-30:340:115:109#Response_reg:360:6.19e-19:476:117:111#Response_reg:504:3.07e-29:620:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000876135::NZ_JYFK01000002.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span49085-50956Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000002.1::G00001Context members
TZ59_RS01320
Partner locus tags
TZ59_RS01320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330377867.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS01320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000002.1Sequence record reported by the local genomic context database.
Genomic interval49 085-50 956 nt1 872 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 085-50 956 ntGCF_000876135::NZ_JYFK01000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000002.1All displayed genes belong to this local TCS context.
Neighborhood span49 085-50 956 nt1 872 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 085 nt50 956 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TZ59_RS01320GCF_000876135#TZ59_RS01320
HKHybridCurrent focus
49 085-50 956 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS01320The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0964269
Simplified PFAM architecture for HKOC_0964269
PFAM domain coverage: 416 / 623 aa (66.8%)
1 aa623 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[113-179] | HATPase_c[226-342] | Response_reg[360-475] | Response_reg[504-619]
- Domain count: 4
- Matched identifier: HKOC_0964269
- Positioned domains: HisKA 113-179 ; HATPase_c 226-342 ; Response_reg 360-475 ; Response_reg 504-619
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key