Gene detail

CH70_RS02110

Response regulator OmpR family

Francisella tularensis subsp. novicida · GCF_000834965

Open genome Open selected cluster RefSeq

ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000834965#CH70_RS02110Stable P2CS identifier used across views.

GenomeGCF_000834965Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

Selected clusterRROC_0862773Run 7 · 11 sequences · id 100% · cov 80%

External referencesWP_003034881.1 · MIST4 CH70_RS02110RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

Response_regTrans_reg_C

Protein length241 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage180 / 241 aa (74.7%)Merged over positioned domains only.

Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa241 aa

Domain-by-domain annotation2 items

1 Response_reg#1

4-113 aa · 110 aa · 45.6% of protein

Raw tokenResponse_reg:4:9.6e-35:113:111:111

2 Trans_reg_C#2

150-219 aa · 70 aa · 29.0% of protein

Raw tokenTrans_reg_C:150:0.0000000000000101:219:72:77

Raw architecture: Response_reg:4:9.6e-35:113:111:111#Trans_reg_C:150:0.0000000000000101:219:72:77
Domain description: 1 Response_reg,1 Trans_reg_C
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000834965::NZ_CP010103.1::G00002

Group size11 locus tag listed below.

HK / RR0 / 1Counts resolved for the local TCS neighborhood.

Context span440753-441478Genomic interval covered by the local TCS group.

Identifiers

Old locus tagCH70_424RefSeq proteinWP_003034881.1

Context group IDGCF_000834965::NZ_CP010103.1::G00002

Context members

CH70_RS02110

Partner locus tags

CH70_RS02110

Partner old locus tags

CH70_424

Partner protein IDs

WP_003034881.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_003034881.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagCH70_RS02110Primary locus identifier stored in the genes table.

Old locus tagCH70_424Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP010103.1Sequence record reported by the local genomic context database.

Genomic interval440 753-441 478 nt726 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span440 753-441 478 ntGCF_000834965::NZ_CP010103.1::G00002

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000834965::NZ_CP010103.1::G00002

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP010103.1All displayed genes belong to this local TCS context.

Neighborhood span440 753-441 478 nt726 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

440 753 nt441 478 nt

+-CH70_RS02110

Neighborhood gene cards

1 gene in the current local neighborhood.

CH70_RS02110GCF_000834965#CH70_RS02110

RROmpRCurrent focus

440 753-441 478 nt · Reverse (-)

Old locus CH70_424RefSeq WP_003034881.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

RROC_0862773RR

Run 711 sequencesid 100%cov 80%

PFAM Response_reg + Trans_reg_C

Representative GCF_000154185#FTCG_RS01035

Selected clusterRROC_0862773Run 7 · RR · 11 sequences

Representative sequenceGCF_000154185#FTCG_RS01035Use this link to inspect the representative gene detail.

PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for RROC_0862773

Simplified PFAM architecture for RROC_0862773

PFAM domain coverage: 181 / 241 aa (75.1%)

1 aa241 aa

Response_regTrans_reg_C

Simplified architecture: Response_reg + Trans_reg_C
Raw architecture: Response_reg[4-113] | Trans_reg_C[149-219]
Domain count: 2
Matched identifier: RROC_0862773
Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219

Cluster members and taxonomy

Representative gene: GCF_000154185#FTCG_RS01035

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 264 · GCF_000834965

AssemblyASM83496v1 · Complete Genomehaploid

Genome composition2 047 033 bp · 32,5% GCFrancisella tularensis subsp. novicida

Signal transduction countsGenes 9 · HK 4 · RR 5CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella

Open genome Search genes in genome Search RR genes NCBI assembly files

Related genes

Preview from the same derived genome key