1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:3.96e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ14_RS04675
Response regulator OmpR family
Francisella tularensis subsp. novicida D9876 · GCF_000833355
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000833355#AQ14_RS04675Stable P2CS identifier used across views.
GenomeGCF_000833355Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:1.49e-21:224:77:77- Raw architecture: Response_reg:5:3.96e-29:114:111:111#Trans_reg_C:149:1.49e-21:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000833355::NZ_CP009607.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span954329-957738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAQ14_939RefSeq proteinWP_003037838.1
Context group ID
GCF_000833355::NZ_CP009607.1::G00001Context members
AQ14_RS04670AQ14_RS04675
Partner locus tags
AQ14_RS04670AQ14_RS04675
Partner old locus tags
AQ14_938AQ14_939
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003037838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ14_RS04675Primary locus identifier stored in the genes table.
Old locus tagAQ14_939Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP009607.1Sequence record reported by the local genomic context database.
Genomic interval957 052-957 738 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span954 329-957 738 ntGCF_000833355::NZ_CP009607.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000833355::NZ_CP009607.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP009607.1All displayed genes belong to this local TCS context.
Neighborhood span954 329-957 738 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
954 329 nt957 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ14_RS04670GCF_000833355#AQ14_RS04670
HKClassic
954 329-957 010 nt · Forward (+)
AQ14_RS04675GCF_000833355#AQ14_RS04675
RROmpRCurrent focus
957 052-957 738 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154265#FTDG_RS01015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302083
Simplified PFAM architecture for RROC_1302083
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1302083
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-224 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_000154265#FTDG_RS01015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 450 527 · GCF_000833355
AssemblyASM83335v1 · Complete Genomereference genome · haploid
Genome composition1 870 206 bp · 32,5% GCFrancisella tularensis subsp. novicida D9876
Signal transduction countsGenes 6 · HK 3 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key