1 HAMP#1
58-126 aa · 69 aa · 19.2% of protein
Raw token
HAMP:58:0.00000000283:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG05_RS19225
Histidine kinase, Classic
Bacillus mycoides · GCF_000832605
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000832605#BG05_RS19225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 359 aa (64.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-201 aa · 64 aa · 17.8% of protein
Raw token
HisKA:138:0.00000000000002:201:64:643 HATPase_c#3
250-348 aa · 99 aa · 27.6% of protein
Raw token
HATPase_c:250:8.58e-16:348:99:109- Raw architecture: HAMP:58:0.00000000283:126:69:69#HisKA:138:0.00000000000002:201:64:64#HATPase_c:250:8.58e-16:348:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000832605::NZ_CP009692.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3379566-3381328Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG05_3515RefSeq proteinWP_033734466.1
Context group ID
GCF_000832605::NZ_CP009692.1::G00048Context members
BG05_RS19225BG05_RS19230
Partner locus tags
BG05_RS19225BG05_RS19230
Partner old locus tags
BG05_3515BG05_3516
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033734466.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6ZE47Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6ZE47_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG05_RS19225Primary locus identifier stored in the genes table.
Old locus tagBG05_3515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP009692.1Sequence record reported by the local genomic context database.
Genomic interval3 379 566-3 380 645 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 379 566-3 381 328 ntGCF_000832605::NZ_CP009692.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000832605::NZ_CP009692.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP009692.1All displayed genes belong to this local TCS context.
Neighborhood span3 379 566-3 381 328 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 379 566 nt3 381 328 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BG05_RS19225GCF_000832605#BG05_RS19225
HKClassicCurrent focus
3 379 566-3 380 645 nt · Reverse (-)
BG05_RS19230GCF_000832605#BG05_RS19230
RROmpR
3 380 642-3 381 328 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2752975
Simplified PFAM architecture for HKOC_2752975
PFAM domain coverage: 210 / 359 aa (58.5%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-353]
- Domain count: 3
- Matched identifier: HKOC_2752975
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-353
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000832605
AssemblyASM83260v1 · Complete Genomehaploid
Genome composition5 637 053 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key