1 HisKA#1
245-313 aa · 69 aa · 14.8% of protein
Raw token
HisKA:245:0.000000000000169:313:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NX98_RS09620
Histidine kinase, Classic
Clostridioides difficile · GCF_000828325
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000828325#NX98_RS09620Stable P2CS identifier used across views.
GenomeGCF_000828325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 467 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
360-466 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:360:1.5e-27:466:108:109- Raw architecture: HisKA:245:0.000000000000169:313:69:64#HATPase_c:360:1.5e-27:466:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000828325::NZ_JXCP01000008.1::G00057
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span56456-57859Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000828325::NZ_JXCP01000008.1::G00057Context members
NX98_RS09620
Partner locus tags
NX98_RS09620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861398.1Primary protein accession used for annex mappings.
UniProt accessionQ187Q9Primary UniProt accession resolved in the annex database.
UniProt IDQ187Q9_CLOD6Display identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNX98_RS09620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JXCP01000008.1Sequence record reported by the local genomic context database.
Genomic interval56 456-57 859 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 456-57 859 ntGCF_000828325::NZ_JXCP01000008.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000828325::NZ_JXCP01000008.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JXCP01000008.1All displayed genes belong to this local TCS context.
Neighborhood span56 456-57 859 nt1 404 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 456 nt57 859 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NX98_RS09620GCF_000828325#NX98_RS09620
HKClassicCurrent focus
56 456-57 859 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS10560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747621
Simplified PFAM architecture for HKOC_1747621
PFAM domain coverage: 167 / 467 aa (35.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[362-466]
- Domain count: 2
- Matched identifier: HKOC_1747621
- Positioned domains: HisKA 245-306 ; HATPase_c 362-466
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS10560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000828325
AssemblyASM82832v1 · Scaffoldhaploid
Genome composition4 549 499 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key