1 HisKA#1
135-198 aa · 64 aa · 17.8% of protein
Raw token
HisKA:135:0.0000000000134:198:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SE45_RS13205
Histidine kinase, Classic
Clostridioides difficile · GCF_000828255
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000828255#SE45_RS13205Stable P2CS identifier used across views.
GenomeGCF_000828255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 360 aa (44.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
248-344 aa · 97 aa · 26.9% of protein
Raw token
HATPase_c:248:7.77e-21:344:97:109- Raw architecture: HisKA:135:0.0000000000134:198:64:64#HATPase_c:248:7.77e-21:344:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000828255::NZ_JXBQ01000014.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46489-48322Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000828255::NZ_JXBQ01000014.1::G00016Context members
SE45_RS13205SE45_RS13210
Partner locus tags
SE45_RS13205SE45_RS13210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161792804.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSE45_RS13205Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JXBQ01000014.1Sequence record reported by the local genomic context database.
Genomic interval46 489-47 571 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 489-48 322 ntGCF_000828255::NZ_JXBQ01000014.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000828255::NZ_JXBQ01000014.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JXBQ01000014.1All displayed genes belong to this local TCS context.
Neighborhood span46 489-48 322 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 489 nt48 322 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SE45_RS13205GCF_000828255#SE45_RS13205
HKClassicCurrent focus
46 489-47 571 nt · Reverse (-)
SE45_RS13210GCF_000828255#SE45_RS13210
RROmpR
47 621-48 322 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000828255#SE45_RS13205The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2747468
Simplified PFAM architecture for HKOC_2747468
PFAM domain coverage: 161 / 360 aa (44.7%)
1 aa360 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[136-198] | HATPase_c[248-345]
- Domain count: 2
- Matched identifier: HKOC_2747468
- Positioned domains: HisKA 136-198 ; HATPase_c 248-345
Cluster members and taxonomy
Representative gene: GCF_000828255#SE45_RS13205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000828255
AssemblyASM82825v1 · Scaffoldhaploid
Genome composition4 539 549 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key