1 HisKA#1
82-144 aa · 63 aa · 20.9% of protein
Raw token
HisKA:82:0.0000000826:144:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SE45_RS00370
Histidine kinase, Classic
Clostridioides difficile · GCF_000828255
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000828255#SE45_RS00370Stable P2CS identifier used across views.
GenomeGCF_000828255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 302 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-295 aa · 100 aa · 33.1% of protein
Raw token
HATPase_c:196:2.39e-22:295:100:109- Raw architecture: HisKA:82:0.0000000826:144:63:64#HATPase_c:196:2.39e-22:295:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000828255::NZ_JXBQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66627-68208Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000828255::NZ_JXBQ01000001.1::G00003Context members
SE45_RS00370SE45_RS00375
Partner locus tags
SE45_RS00370SE45_RS00375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009897088.1Primary protein accession used for annex mappings.
UniProt accessionQ187R5Primary UniProt accession resolved in the annex database.
UniProt IDQ187R5_CLOD6Display identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSE45_RS00370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JXBQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval66 627-67 535 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 627-68 208 ntGCF_000828255::NZ_JXBQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000828255::NZ_JXBQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JXBQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span66 627-68 208 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 627 nt68 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SE45_RS00370GCF_000828255#SE45_RS00370
HKClassicCurrent focus
66 627-67 535 nt · Reverse (-)
SE45_RS00375GCF_000828255#SE45_RS00375
RROmpR
67 537-68 208 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS10595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884663
Simplified PFAM architecture for HKOC_2884663
PFAM domain coverage: 165 / 302 aa (54.6%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[82-144] | HATPase_c[195-296]
- Domain count: 2
- Matched identifier: HKOC_2884663
- Positioned domains: HisKA 82-144 ; HATPase_c 195-296
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS10595
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 606 total members. Page 1 / 13.
GCF_000009205#CD630_RS10595 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000828255
AssemblyASM82825v1 · Scaffoldhaploid
Genome composition4 539 549 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key