1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:1.24e-19:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY80_RS01545
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_000825145
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000825145#TY80_RS01545Stable P2CS identifier used across views.
GenomeGCF_000825145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.0000000000000692:192:52:58- Raw architecture: Response_reg:1:1.24e-19:110:111:111#HTH_LUXR:141:0.0000000000000692:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000825145::NZ_CCWT01000003.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span244455-245057Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIC_h00299RefSeq proteinWP_012576686.1
Context group ID
GCF_000825145::NZ_CCWT01000003.1::G00003Context members
TY80_RS01545
Partner locus tags
TY80_RS01545
Partner old locus tags
BLIC_h00299
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576686.1Primary protein accession used for annex mappings.
UniProt accessionB7GTT1Primary UniProt accession resolved in the annex database.
UniProt IDB7GTT1_BIFLSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY80_RS01545Primary locus identifier stored in the genes table.
Old locus tagBLIC_h00299Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CCWT01000003.1Sequence record reported by the local genomic context database.
Genomic interval244 455-245 057 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 455-245 057 ntGCF_000825145::NZ_CCWT01000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000825145::NZ_CCWT01000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCWT01000003.1All displayed genes belong to this local TCS context.
Neighborhood span244 455-245 057 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 455 nt245 057 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TY80_RS01545GCF_000825145#TY80_RS01545
RRNarLCurrent focus
244 455-245 057 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003130775#CWE05_RS12120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0496192
Simplified PFAM architecture for RROC_0496192
PFAM domain coverage: 162 / 343 aa (47.2%)
1 aa343 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[142-251] | GerE[284-335]
- Domain count: 2
- Matched identifier: RROC_0496192
- Positioned domains: Response_reg 142-251 ; Response_reg 142-251 ; GerE 284-335 ; GerE 284-335
Cluster members and taxonomy
Representative gene: GCF_003130775#CWE05_RS12120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_000825145
AssemblyBIB1401272845b.V1 · Contighaploid
Genome composition2 786 838 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key