1 Response_reg#1
5-105 aa · 101 aa · 45.5% of protein
Raw token
Response_reg:5:0.0000000000000386:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY83_RS02475
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_000825105
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000825105#TY83_RS02475Stable P2CS identifier used across views.
GenomeGCF_000825105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 222 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 25.2% of protein
Raw token
HTH_LUXR:160:0.00000000000000106:215:56:58- Raw architecture: Response_reg:5:0.0000000000000386:105:101:111#HTH_LUXR:160:0.00000000000000106:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000825105::NZ_CCWU01000010.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9055-9723Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIC_f00496RefSeq proteinWP_232015708.1
Context group ID
GCF_000825105::NZ_CCWU01000010.1::G00005Context members
TY83_RS02475
Partner locus tags
TY83_RS02475
Partner old locus tags
BLIC_f00496
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232015708.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY83_RS02475Primary locus identifier stored in the genes table.
Old locus tagBLIC_f00496Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CCWU01000010.1Sequence record reported by the local genomic context database.
Genomic interval9 055-9 723 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 055-9 723 ntGCF_000825105::NZ_CCWU01000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000825105::NZ_CCWU01000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCWU01000010.1All displayed genes belong to this local TCS context.
Neighborhood span9 055-9 723 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 055 nt9 723 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TY83_RS02475GCF_000825105#TY83_RS02475
RRNarLCurrent focus
9 055-9 723 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637416
Simplified PFAM architecture for RROC_1637416
PFAM domain coverage: 157 / 222 aa (70.7%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-106] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1637416
- Positioned domains: Response_reg 5-106 ; Response_reg 5-106 ; GerE 161-215 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_000825105
AssemblyBIB1401242951.V1 · Contighaploid
Genome composition2 787 528 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key