1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000128:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY75_RS03775
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_000825085
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000825085#TY75_RS03775Stable P2CS identifier used across views.
GenomeGCF_000825085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:5.02e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:4.05e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000128:335:69:69#HisKA:347:5.02e-18:416:70:64#HATPase_c:480:4.05e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000825085::NZ_CCWQ01000014.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19932-22684Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIC_e00766RefSeq proteinWP_012577090.1
Context group ID
GCF_000825085::NZ_CCWQ01000014.1::G00010Context members
TY75_RS03770TY75_RS03775
Partner locus tags
TY75_RS03770TY75_RS03775
Partner old locus tags
BLIC_e00765BLIC_e00766
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012577090.1Primary protein accession used for annex mappings.
UniProt accessionB7GPS2Primary UniProt accession resolved in the annex database.
UniProt IDB7GPS2_BIFLSDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY75_RS03775Primary locus identifier stored in the genes table.
Old locus tagBLIC_e00766Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CCWQ01000014.1Sequence record reported by the local genomic context database.
Genomic interval20 693-22 684 nt1 992 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 932-22 684 ntGCF_000825085::NZ_CCWQ01000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000825085::NZ_CCWQ01000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCWQ01000014.1All displayed genes belong to this local TCS context.
Neighborhood span19 932-22 684 nt2 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 932 nt22 684 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TY75_RS03770GCF_000825085#TY75_RS03770
RROmpR
19 932-20 663 nt · Forward (+)
TY75_RS03775GCF_000825085#TY75_RS03775
HKClassicCurrent focus
20 693-22 684 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS03540Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864160
Simplified PFAM architecture for HKOC_0864160
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0864160
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS03540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_000825085
AssemblyBIC1401212621b.V1 · Contighaploid
Genome composition2 821 883 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key