1 Response_reg#1
9-136 aa · 128 aa · 44.8% of protein
Raw token
Response_reg:9:7.02e-29:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY79_RS08990
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_000825045
ClassRRTypeNarLLength286 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000825045#TY79_RS08990Stable P2CS identifier used across views.
GenomeGCF_000825045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length286 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 286 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa286 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
223-280 aa · 58 aa · 20.3% of protein
Raw token
HTH_LUXR:223:8.92e-25:280:58:58- Raw architecture: Response_reg:9:7.02e-29:136:128:111#HTH_LUXR:223:8.92e-25:280:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000825045::NZ_CCWP01000038.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124373-127704Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIC_c01856RefSeq proteinWP_041982012.1
Context group ID
GCF_000825045::NZ_CCWP01000038.1::G00016Context members
TY79_RS08985TY79_RS08990
Partner locus tags
TY79_RS08985TY79_RS08990
Partner old locus tags
BLIC_c01855BLIC_c01856
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041982012.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY79_RS08990Primary locus identifier stored in the genes table.
Old locus tagBLIC_c01856Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CCWP01000038.1Sequence record reported by the local genomic context database.
Genomic interval126 844-127 704 nt861 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 373-127 704 ntGCF_000825045::NZ_CCWP01000038.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000825045::NZ_CCWP01000038.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCWP01000038.1All displayed genes belong to this local TCS context.
Neighborhood span124 373-127 704 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 373 nt127 704 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TY79_RS08985GCF_000825045#TY79_RS08985
HKClassic
124 373-126 760 nt · Forward (+)
TY79_RS08990GCF_000825045#TY79_RS08990
RRNarLCurrent focus
126 844-127 704 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS08780Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590482
Simplified PFAM architecture for RROC_0590482
PFAM domain coverage: 183 / 286 aa (64.0%)
1 aa286 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-135] | GerE[225-280]
- Domain count: 2
- Matched identifier: RROC_0590482
- Positioned domains: Response_reg 9-135 ; Response_reg 9-135 ; GerE 225-280 ; GerE 225-280
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS08780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_000825045
AssemblyBIC1401111250.V1 · Contighaploid
Genome composition2 793 888 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key