1 Response_reg#1
4-120 aa · 117 aa · 49.6% of protein
Raw token
Response_reg:4:4.41e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY67_RS08460
Response regulator LytTR family
Clostridioides difficile · GCF_000821005
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000821005#TY67_RS08460Stable P2CS identifier used across views.
GenomeGCF_000821005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.0% of protein
Raw token
LytTR:141:6.86e-19:225:92:98- Raw architecture: Response_reg:4:4.41e-22:120:119:111#LytTR:141:6.86e-19:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000821005::NZ_CCDW01000009.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8756-9466Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000821005::NZ_CCDW01000009.1::G00025Context members
TY67_RS08460
Partner locus tags
TY67_RS08460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021423911.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY67_RS08460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CCDW01000009.1Sequence record reported by the local genomic context database.
Genomic interval8 756-9 466 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 756-9 466 ntGCF_000821005::NZ_CCDW01000009.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000821005::NZ_CCDW01000009.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCDW01000009.1All displayed genes belong to this local TCS context.
Neighborhood span8 756-9 466 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 756 nt9 466 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TY67_RS08460GCF_000821005#TY67_RS08460
RRLytTRCurrent focus
8 756-9 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS15200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989909
Simplified PFAM architecture for RROC_0989909
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0989909
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS15200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000821005
AssemblyCII7xCD13A · Contighaploid
Genome composition4 282 024 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key