1 Response_reg#1
5-114 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:5:7.83e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TY67_RS01405
Response regulator OmpR family
Clostridioides difficile · GCF_000821005
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000821005#TY67_RS01405Stable P2CS identifier used across views.
GenomeGCF_000821005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:157:7.2e-31:233:77:77- Raw architecture: Response_reg:5:7.83e-34:114:111:111#Trans_reg_C:157:7.2e-31:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000821005::NZ_CCDW01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span314882-317156Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000821005::NZ_CCDW01000001.1::G00003Context members
TY67_RS01405TY67_RS01410
Partner locus tags
TY67_RS01405TY67_RS01410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTY67_RS01405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CCDW01000001.1Sequence record reported by the local genomic context database.
Genomic interval314 882-315 598 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span314 882-317 156 ntGCF_000821005::NZ_CCDW01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000821005::NZ_CCDW01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCDW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span314 882-317 156 nt2 275 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
314 882 nt317 156 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TY67_RS01405GCF_000821005#TY67_RS01405
RROmpRCurrent focus
314 882-315 598 nt · Forward (+)
TY67_RS01410GCF_000821005#TY67_RS01410
HKClassic
315 567-317 156 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS06870Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0934134
Simplified PFAM architecture for RROC_0934134
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0934134
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS06870
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 51 total members. Page 1 / 2.
GCF_000451765#QSM_RS06870 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000821005
AssemblyCII7xCD13A · Contighaploid
Genome composition4 282 024 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key