1 Response_reg#1
18-110 aa · 93 aa · 41.5% of protein
Raw token
Response_reg:18:1.85e-19:110:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AH68_RS09645
Response regulator LytTR family
Bifidobacterium catenulatum PV20-2 · GCF_000800455
ClassRRTypeLytTRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000800455#AH68_RS09645Stable P2CS identifier used across views.
GenomeGCF_000800455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 LytTR#2
126-214 aa · 89 aa · 39.7% of protein
Raw token
LytTR:126:4.19e-19:214:95:98- Raw architecture: Response_reg:18:1.85e-19:110:95:111#LytTR:126:4.19e-19:214:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000800455::NZ_CP007456.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2260732-2261406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAH68_09995RefSeq proteinWP_236682415.1
Context group ID
GCF_000800455::NZ_CP007456.1::G00017Context members
AH68_RS09645
Partner locus tags
AH68_RS09645
Partner old locus tags
AH68_09995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236682415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAH68_RS09645Primary locus identifier stored in the genes table.
Old locus tagAH68_09995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007456.1Sequence record reported by the local genomic context database.
Genomic interval2 260 732-2 261 406 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 260 732-2 261 406 ntGCF_000800455::NZ_CP007456.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000800455::NZ_CP007456.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007456.1All displayed genes belong to this local TCS context.
Neighborhood span2 260 732-2 261 406 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 260 732 nt2 261 406 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AH68_RS09645GCF_000800455#AH68_RS09645
RRLytTRCurrent focus
2 260 732-2 261 406 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS09645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1534097
Simplified PFAM architecture for RROC_1534097
PFAM domain coverage: 168 / 224 aa (75.0%)
1 aa224 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[17-97] | LytTR[128-214]
- Domain count: 2
- Matched identifier: RROC_1534097
- Positioned domains: Response_reg 17-97 ; Response_reg 17-97 ; LytTR 128-214 ; LytTR 128-214
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS09645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 447 716 · GCF_000800455
AssemblyASM80045v1 · Complete Genomehaploid
Genome composition2 370 978 bp · 56,0% GCBifidobacterium catenulatum PV20-2
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key