1 HAMP#1
128-198 aa · 71 aa · 16.5% of protein
Raw token
HAMP:128:0.0000000186:198:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AH68_RS08865
Histidine kinase, Classic
Bifidobacterium catenulatum PV20-2 · GCF_000800455
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000800455#AH68_RS08865Stable P2CS identifier used across views.
GenomeGCF_000800455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 430 aa (54.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-267 aa · 65 aa · 15.1% of protein
Raw token
HisKA:203:0.0000000000749:267:65:643 HATPase_c#3
315-410 aa · 96 aa · 22.3% of protein
Raw token
HATPase_c:315:0.00000000000129:410:96:109- Raw architecture: HAMP:128:0.0000000186:198:71:69#HisKA:203:0.0000000000749:267:65:64#HATPase_c:315:0.00000000000129:410:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000800455::NZ_CP007456.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2067707-2069658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAH68_09185RefSeq proteinWP_039199323.1
Context group ID
GCF_000800455::NZ_CP007456.1::G00016Context members
AH68_RS08865AH68_RS08870
Partner locus tags
AH68_RS08865AH68_RS08870
Partner old locus tags
AH68_09185AH68_09190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039199323.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A7I4P5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A7I4P5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAH68_RS08865Primary locus identifier stored in the genes table.
Old locus tagAH68_09185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007456.1Sequence record reported by the local genomic context database.
Genomic interval2 067 707-2 068 999 nt1 293 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 067 707-2 069 658 ntGCF_000800455::NZ_CP007456.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000800455::NZ_CP007456.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007456.1All displayed genes belong to this local TCS context.
Neighborhood span2 067 707-2 069 658 nt1 952 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 067 707 nt2 069 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AH68_RS08865GCF_000800455#AH68_RS08865
HKClassicCurrent focus
2 067 707-2 068 999 nt · Reverse (-)
AH68_RS08870GCF_000800455#AH68_RS08870
RROmpR
2 068 996-2 069 658 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS08865The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2172606
Simplified PFAM architecture for HKOC_2172606
PFAM domain coverage: 160 / 430 aa (37.2%)
1 aa430 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-267] | HATPase_c[316-410]
- Domain count: 2
- Matched identifier: HKOC_2172606
- Positioned domains: HisKA 203-267 ; HATPase_c 316-410
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS08865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 447 716 · GCF_000800455
AssemblyASM80045v1 · Complete Genomehaploid
Genome composition2 370 978 bp · 56,0% GCBifidobacterium catenulatum PV20-2
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key