1 Response_reg#1
15-129 aa · 115 aa · 51.6% of protein
Raw token
Response_reg:15:0.000000000000277:129:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AH68_RS08710
Response regulator NarL family
Bifidobacterium catenulatum PV20-2 · GCF_000800455
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000800455#AH68_RS08710Stable P2CS identifier used across views.
GenomeGCF_000800455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 223 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
163-216 aa · 54 aa · 24.2% of protein
Raw token
HTH_LUXR:163:1.98e-18:216:54:58- Raw architecture: Response_reg:15:0.000000000000277:129:115:111#HTH_LUXR:163:1.98e-18:216:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000800455::NZ_CP007456.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2029304-2029975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAH68_09025RefSeq proteinWP_081995921.1
Context group ID
GCF_000800455::NZ_CP007456.1::G00015Context members
AH68_RS08710
Partner locus tags
AH68_RS08710
Partner old locus tags
AH68_09025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081995921.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A7I8K7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A7I8K7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAH68_RS08710Primary locus identifier stored in the genes table.
Old locus tagAH68_09025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007456.1Sequence record reported by the local genomic context database.
Genomic interval2 029 304-2 029 975 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 029 304-2 029 975 ntGCF_000800455::NZ_CP007456.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000800455::NZ_CP007456.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007456.1All displayed genes belong to this local TCS context.
Neighborhood span2 029 304-2 029 975 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 029 304 nt2 029 975 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AH68_RS08710GCF_000800455#AH68_RS08710
RRNarLCurrent focus
2 029 304-2 029 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS08710The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591803
Simplified PFAM architecture for RROC_1591803
PFAM domain coverage: 170 / 223 aa (76.2%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-129] | GerE[162-216]
- Domain count: 2
- Matched identifier: RROC_1591803
- Positioned domains: Response_reg 15-129 ; Response_reg 15-129 ; GerE 162-216 ; GerE 162-216
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS08710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 447 716 · GCF_000800455
AssemblyASM80045v1 · Complete Genomehaploid
Genome composition2 370 978 bp · 56,0% GCBifidobacterium catenulatum PV20-2
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key