1 Response_reg#1
4-104 aa · 101 aa · 45.9% of protein
Raw token
Response_reg:4:8.76e-24:104:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AH68_RS06895
Response regulator NarL family
Bifidobacterium catenulatum PV20-2 · GCF_000800455
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000800455#AH68_RS06895Stable P2CS identifier used across views.
GenomeGCF_000800455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 220 aa (70.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-214 aa · 53 aa · 24.1% of protein
Raw token
HTH_LUXR:162:1.24e-21:214:53:58- Raw architecture: Response_reg:4:8.76e-24:104:101:111#HTH_LUXR:162:1.24e-21:214:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000800455::NZ_CP007456.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1559471-1561107Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAH68_07130RefSeq proteinWP_039198840.1
Context group ID
GCF_000800455::NZ_CP007456.1::G00012Context members
AH68_RS06895AH68_RS06900
Partner locus tags
AH68_RS06895AH68_RS06900
Partner old locus tags
AH68_07130AH68_07135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039198840.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A7I7R4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A7I7R4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAH68_RS06895Primary locus identifier stored in the genes table.
Old locus tagAH68_07130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007456.1Sequence record reported by the local genomic context database.
Genomic interval1 559 471-1 560 133 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 559 471-1 561 107 ntGCF_000800455::NZ_CP007456.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000800455::NZ_CP007456.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007456.1All displayed genes belong to this local TCS context.
Neighborhood span1 559 471-1 561 107 nt1 637 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 559 471 nt1 561 107 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AH68_RS06895GCF_000800455#AH68_RS06895
RRNarLCurrent focus
1 559 471-1 560 133 nt · Reverse (-)
AH68_RS06900GCF_000800455#AH68_RS06900
HKClassic
1 560 130-1 561 107 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS06895The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1726204
Simplified PFAM architecture for RROC_1726204
PFAM domain coverage: 156 / 220 aa (70.9%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-105] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1726204
- Positioned domains: Response_reg 4-105 ; Response_reg 4-105 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS06895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 447 716 · GCF_000800455
AssemblyASM80045v1 · Complete Genomehaploid
Genome composition2 370 978 bp · 56,0% GCBifidobacterium catenulatum PV20-2
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key