1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000228:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NL89_RS09285
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_000786175
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000786175#NL89_RS09285Stable P2CS identifier used across views.
GenomeGCF_000786175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000797:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000228:278:64:68#HATPase_c:325:0.0000000797:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000786175::NZ_JRWN01000018.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82568-84573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNL89_09270RefSeq proteinWP_047379866.1
Context group ID
GCF_000786175::NZ_JRWN01000018.1::G00007Context members
NL89_RS09280NL89_RS09285
Partner locus tags
NL89_RS09280NL89_RS09285
Partner old locus tags
NL89_09265NL89_09270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_047379866.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNL89_RS09285Primary locus identifier stored in the genes table.
Old locus tagNL89_09270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JRWN01000018.1Sequence record reported by the local genomic context database.
Genomic interval83 221-84 573 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 568-84 573 ntGCF_000786175::NZ_JRWN01000018.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000786175::NZ_JRWN01000018.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JRWN01000018.1All displayed genes belong to this local TCS context.
Neighborhood span82 568-84 573 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 568 nt84 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NL89_RS09280GCF_000786175#NL89_RS09280
RRNarL
82 568-83 221 nt · Reverse (-)
NL89_RS09285GCF_000786175#NL89_RS09285
HKClassicCurrent focus
83 221-84 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000786175#NL89_RS09285The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962986
Simplified PFAM architecture for HKOC_1962986
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962986
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000786175#NL89_RS09285
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000786175#NL89_RS09285 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_000786175
AssemblyASM78617v1 · Scaffoldhaploid
Genome composition2 501 933 bp · 60,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key