1 HAMP#1
288-355 aa · 68 aa · 11.4% of protein
Raw token
HAMP:288:0.00000000000181:355:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BWEI_RS08945
Histidine kinase, Classic
Bacillus mycoides · GCF_000775975
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000775975#BWEI_RS08945Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 594 aa (39.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation3 items
2 HisKA#2
375-439 aa · 65 aa · 10.9% of protein
Raw token
HisKA:375:0.000000000000732:439:65:643 HATPase_c#3
487-590 aa · 104 aa · 17.5% of protein
Raw token
HATPase_c:487:5.61e-20:590:105:109- Raw architecture: HAMP:288:0.00000000000181:355:68:69#HisKA:375:0.000000000000732:439:65:64#HATPase_c:487:5.61e-20:590:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000775975::NZ_CP009746.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1749113-1751580Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbwei_1875RefSeq proteinWP_033709286.1
Context group ID
GCF_000775975::NZ_CP009746.1::G00018Context members
BWEI_RS08940BWEI_RS08945
Partner locus tags
BWEI_RS08940BWEI_RS08945
Partner old locus tags
bwei_1874bwei_1875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033709286.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBWEI_RS08945Primary locus identifier stored in the genes table.
Old locus tagbwei_1875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP009746.1Sequence record reported by the local genomic context database.
Genomic interval1 749 796-1 751 580 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 749 113-1 751 580 ntGCF_000775975::NZ_CP009746.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000775975::NZ_CP009746.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP009746.1All displayed genes belong to this local TCS context.
Neighborhood span1 749 113-1 751 580 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 749 113 nt1 751 580 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BWEI_RS08940GCF_000775975#BWEI_RS08940
RROmpR
1 749 113-1 749 799 nt · Forward (+)
BWEI_RS08945GCF_000775975#BWEI_RS08945
HKClassicCurrent focus
1 749 796-1 751 580 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS22780Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1087330
Simplified PFAM architecture for HKOC_1087330
PFAM domain coverage: 219 / 594 aa (36.9%)
1 aa594 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[306-355] | HisKA[375-439] | HATPase_c[486-589]
- Domain count: 3
- Matched identifier: HKOC_1087330
- Positioned domains: HAMP 306-355 ; HisKA 375-439 ; HATPase_c 486-589
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS22780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000775975
AssemblyASM77597v1 · Complete Genomehaploid
Genome composition5 608 349 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key