1 Response_reg#1
11-128 aa · 118 aa · 46.3% of protein
Raw token
Response_reg:11:5.74e-16:128:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU22_RS11390
Response regulator LytTR family
Bifidobacterium saguini DSM 23967 · GCF_000771625
ClassRRTypeLytTRLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000771625#OU22_RS11390Stable P2CS identifier used across views.
GenomeGCF_000771625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 255 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 LytTR#2
168-249 aa · 82 aa · 32.2% of protein
Raw token
LytTR:168:0.000000000000255:249:88:98- Raw architecture: Response_reg:11:5.74e-16:128:121:111#LytTR:168:0.000000000000255:249:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000771625::NZ_JDUT01000020.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span385-1152Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771625::NZ_JDUT01000020.1::G00008Context members
OU22_RS11390
Partner locus tags
OU22_RS11390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161786518.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S950Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S950_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU22_RS11390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUT01000020.1Sequence record reported by the local genomic context database.
Genomic interval385-1 152 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span385-1 152 ntGCF_000771625::NZ_JDUT01000020.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771625::NZ_JDUT01000020.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUT01000020.1All displayed genes belong to this local TCS context.
Neighborhood span385-1 152 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
385 nt1 152 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OU22_RS11390GCF_000771625#OU22_RS11390
RRLytTRCurrent focus
385-1 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS08990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680631
Simplified PFAM architecture for RROC_0680631
PFAM domain coverage: 164 / 255 aa (64.3%)
1 aa255 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[53-130] | LytTR[164-249]
- Domain count: 2
- Matched identifier: RROC_0680631
- Positioned domains: Response_reg 53-130 ; Response_reg 53-130 ; LytTR 164-249 ; LytTR 164-249
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS08990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000771625
AssemblyDSM-23967 · Contighaploid
Genome composition2 773 425 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key