1 Response_reg#1
3-106 aa · 104 aa · 47.9% of protein
Raw token
Response_reg:3:4.63e-18:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU22_RS04930
Response regulator NarL family
Bifidobacterium saguini DSM 23967 · GCF_000771625
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771625#OU22_RS04930Stable P2CS identifier used across views.
GenomeGCF_000771625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 217 aa (73.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-210 aa · 55 aa · 25.3% of protein
Raw token
HTH_LUXR:156:9.39e-18:210:55:58- Raw architecture: Response_reg:3:4.63e-18:106:104:111#HTH_LUXR:156:9.39e-18:210:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771625::NZ_JDUT01000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40448-42447Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771625::NZ_JDUT01000004.1::G00014Context members
OU22_RS04930OU22_RS04935
Partner locus tags
OU22_RS04930OU22_RS04935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033891020.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SCX0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SCX0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU22_RS04930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUT01000004.1Sequence record reported by the local genomic context database.
Genomic interval40 448-41 101 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 448-42 447 ntGCF_000771625::NZ_JDUT01000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771625::NZ_JDUT01000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span40 448-42 447 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 448 nt42 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU22_RS04930GCF_000771625#OU22_RS04930
RRNarLCurrent focus
40 448-41 101 nt · Reverse (-)
OU22_RS04935GCF_000771625#OU22_RS04935
HKClassic
41 098-42 447 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS06995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1849782
Simplified PFAM architecture for RROC_1849782
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1849782
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS06995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000771625
AssemblyDSM-23967 · Contighaploid
Genome composition2 773 425 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key