1 HisKA#1
188-253 aa · 66 aa · 14.6% of protein
Raw token
HisKA:188:0.00000000000588:253:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU18_RS02355
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 · GCF_000771545
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771545#OU18_RS02355Stable P2CS identifier used across views.
GenomeGCF_000771545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 452 aa (38.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-425 aa · 110 aa · 24.3% of protein
Raw token
HATPase_c:316:4.19e-29:425:110:109- Raw architecture: HisKA:188:0.00000000000588:253:66:64#HATPase_c:316:4.19e-29:425:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771545::NZ_JDUP01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266243-268388Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771545::NZ_JDUP01000002.1::G00004Context members
OU18_RS02355OU18_RS02360
Partner locus tags
OU18_RS02355OU18_RS02360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033500777.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1P923Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1P923_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU18_RS02355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUP01000002.1Sequence record reported by the local genomic context database.
Genomic interval266 243-267 601 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span266 243-268 388 ntGCF_000771545::NZ_JDUP01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771545::NZ_JDUP01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span266 243-268 388 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 243 nt268 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU18_RS02355GCF_000771545#OU18_RS02355
HKClassicCurrent focus
266 243-267 601 nt · Forward (+)
OU18_RS02360GCF_000771545#OU18_RS02360
RROmpR
267 684-268 388 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741605#BKAS_RS09235Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1938070
Simplified PFAM architecture for HKOC_1938070
PFAM domain coverage: 177 / 452 aa (39.2%)
1 aa452 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[188-253] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_1938070
- Positioned domains: HisKA 188-253 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000741605#BKAS_RS09235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 460 · GCF_000771545
AssemblyDSM-21854 · Contighaploid
Genome composition2 323 455 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key