1 HAMP#1
44-114 aa · 71 aa · 20.6% of protein
Raw token
HAMP:44:4.4e-18:114:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OT96_RS10750
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000771105
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000771105#OT96_RS10750Stable P2CS identifier used across views.
GenomeGCF_000771105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 344 aa (71.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation3 items
2 HisKA#2
118-182 aa · 65 aa · 18.9% of protein
Raw token
HisKA:118:8.22e-16:182:65:643 HATPase_c#3
227-337 aa · 111 aa · 32.3% of protein
Raw token
HATPase_c:227:5.9e-21:337:112:109- Raw architecture: HAMP:44:4.4e-18:114:71:69#HisKA:118:8.22e-16:182:65:64#HATPase_c:227:5.9e-21:337:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000771105::NZ_JDTT01000058.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span11-1045Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771105::NZ_JDTT01000058.1::G00014Context members
OT96_RS10750
Partner locus tags
OT96_RS10750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_050510625.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOT96_RS10750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDTT01000058.1Sequence record reported by the local genomic context database.
Genomic interval11-1 045 nt1 035 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11-1 045 ntGCF_000771105::NZ_JDTT01000058.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771105::NZ_JDTT01000058.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDTT01000058.1All displayed genes belong to this local TCS context.
Neighborhood span11-1 045 nt1 035 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 nt1 045 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OT96_RS10750GCF_000771105#OT96_RS10750
HKClassicCurrent focus
11-1 045 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS09150Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765026
Simplified PFAM architecture for HKOC_2765026
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765026
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS09150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000771105
AssemblyDSM-20088 · Contighaploid
Genome composition2 780 321 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key