1 HAMP#1
127-198 aa · 72 aa · 16.8% of protein
Raw token
HAMP:127:0.0000826:198:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OT96_RS08460
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000771105
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771105#OT96_RS08460Stable P2CS identifier used across views.
GenomeGCF_000771105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 429 aa (56.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation3 items
2 HisKA#2
209-270 aa · 62 aa · 14.5% of protein
Raw token
HisKA:209:0.00000000000000321:270:62:643 HATPase_c#3
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:1.76e-20:428:110:109- Raw architecture: HAMP:127:0.0000826:198:72:69#HisKA:209:0.00000000000000321:270:62:64#HATPase_c:319:1.76e-20:428:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771105::NZ_JDTT01000034.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2944-5030Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771105::NZ_JDTT01000034.1::G00011Context members
OT96_RS08455OT96_RS08460
Partner locus tags
OT96_RS08455OT96_RS08460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158309819.1Primary protein accession used for annex mappings.
UniProt accessionA0ABM9R415Primary UniProt accession resolved in the annex database.
UniProt IDA0ABM9R415_BIFLIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOT96_RS08460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDTT01000034.1Sequence record reported by the local genomic context database.
Genomic interval3 741-5 030 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 944-5 030 ntGCF_000771105::NZ_JDTT01000034.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771105::NZ_JDTT01000034.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDTT01000034.1All displayed genes belong to this local TCS context.
Neighborhood span2 944-5 030 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 944 nt5 030 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OT96_RS08455GCF_000771105#OT96_RS08455
RROmpR
2 944-3 681 nt · Forward (+)
OT96_RS08460GCF_000771105#OT96_RS08460
HKClassicCurrent focus
3 741-5 030 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS05075Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180234
Simplified PFAM architecture for HKOC_2180234
PFAM domain coverage: 173 / 429 aa (40.3%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-271] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2180234
- Positioned domains: HisKA 209-271 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS05075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000771105
AssemblyDSM-20088 · Contighaploid
Genome composition2 780 321 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key