1 HisKA_3#1
242-300 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:242:0.0000000000000108:300:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OT96_RS02410
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 · GCF_000771105
ClassHKTypeClassicLength795 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771105#OT96_RS02410Stable P2CS identifier used across views.
GenomeGCF_000771105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length795 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 795 aa (28.2%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa795 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
343-436 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:343:0.00000000000028:436:110:1093 HisKA_3#3
692-762 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:692:0.0000073:762:71:68- Raw architecture: HisKA_3:242:0.0000000000000108:300:59:68#HATPase_c:343:0.00000000000028:436:110:109#HisKA_3:692:0.0000073:762:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771105::NZ_JDTT01000008.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87493-90824Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771105::NZ_JDTT01000008.1::G00021Context members
OT96_RS02405OT96_RS02410
Partner locus tags
OT96_RS02405OT96_RS02410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014485007.1Primary protein accession used for annex mappings.
UniProt accessionA0ABP1XC23Primary UniProt accession resolved in the annex database.
UniProt IDA0ABP1XC23_BIFLIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOT96_RS02410Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDTT01000008.1Sequence record reported by the local genomic context database.
Genomic interval88 437-90 824 nt2 388 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 493-90 824 ntGCF_000771105::NZ_JDTT01000008.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771105::NZ_JDTT01000008.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDTT01000008.1All displayed genes belong to this local TCS context.
Neighborhood span87 493-90 824 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 493 nt90 824 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OT96_RS02405GCF_000771105#OT96_RS02405
RRNarL
87 493-88 353 nt · Reverse (-)
OT96_RS02410GCF_000771105#OT96_RS02410
HKClassicCurrent focus
88 437-90 824 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000825005#BLIC_RS08945Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0559769
Simplified PFAM architecture for HKOC_0559769
PFAM domain coverage: 410 / 798 aa (51.4%)
1 aa798 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-139] | HisKA_3[245-306] | HATPase_c[346-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0559769
- Positioned domains: DUF7134 16-139 ; HisKA_3 245-306 ; HATPase_c 346-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_000825005#BLIC_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 391 904 · GCF_000771105
AssemblyDSM-20088 · Contighaploid
Genome composition2 780 321 bp · 60,0% GCBifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key