1 HAMP#1
224-293 aa · 70 aa · 11.3% of protein
Raw token
HAMP:224:0.00000000000000176:293:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPSE_RS00570
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 · GCF_000741685
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741685#BPSE_RS00570Stable P2CS identifier used across views.
GenomeGCF_000741685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 617 aa (46.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-373 aa · 70 aa · 11.3% of protein
Raw token
HisKA:304:1.33e-16:373:70:643 HATPase_c#3
437-584 aa · 148 aa · 24.0% of protein
Raw token
HATPase_c:437:6.68e-20:584:148:109- Raw architecture: HAMP:224:0.00000000000000176:293:70:69#HisKA:304:1.33e-16:373:70:64#HATPase_c:437:6.68e-20:584:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741685::NZ_JGZF01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129851-132447Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBPSE_0110RefSeq proteinWP_034885707.1
Context group ID
GCF_000741685::NZ_JGZF01000001.1::G00002Context members
BPSE_RS00565BPSE_RS00570
Partner locus tags
BPSE_RS00565BPSE_RS00570
Partner old locus tags
BPSE_0109BPSE_0110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_034885707.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPSE_RS00570Primary locus identifier stored in the genes table.
Old locus tagBPSE_0110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZF01000001.1Sequence record reported by the local genomic context database.
Genomic interval130 594-132 447 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 851-132 447 ntGCF_000741685::NZ_JGZF01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741685::NZ_JGZF01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span129 851-132 447 nt2 597 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 851 nt132 447 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPSE_RS00565GCF_000741685#BPSE_RS00565
RROmpR
129 851-130 582 nt · Forward (+)
BPSE_RS00570GCF_000741685#BPSE_RS00570
HKClassicCurrent focus
130 594-132 447 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741685#BPSE_RS00570The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982180
Simplified PFAM architecture for HKOC_0982180
PFAM domain coverage: 268 / 617 aa (43.4%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[242-293] | HisKA[305-373] | HATPase_c[437-583]
- Domain count: 3
- Matched identifier: HKOC_0982180
- Positioned domains: HAMP 242-293 ; HisKA 305-373 ; HATPase_c 437-583
Cluster members and taxonomy
Representative gene: GCF_000741685#BPSE_RS00570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 547 043 · GCF_000741685
AssemblyBifpsetum · Contighaploid
Genome composition2 283 768 bp · 56,5% GCBifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
Signal transduction countsGenes 29 · HK 12 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key