1 HisKA_3#1
241-303 aa · 63 aa · 7.3% of protein
Raw token
HisKA_3:241:4.93e-18:303:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BSTER_RS08110
Histidine kinase, Classic
Bifidobacterium adolescentis JCM 15918 · GCF_000741415
ClassHKTypeClassicLength868 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741415#BSTER_RS08110Stable P2CS identifier used across views.
GenomeGCF_000741415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length868 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 868 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa868 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-438 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:352:0.000000000000396:438:104:109- Raw architecture: HisKA_3:241:4.93e-18:303:63:68#HATPase_c:352:0.000000000000396:438:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741415::NZ_JGZQ01000008.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span787361-790792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBSTER_0630RefSeq proteinWP_033499152.1
Context group ID
GCF_000741415::NZ_JGZQ01000008.1::G00011Context members
BSTER_RS08105BSTER_RS08110
Partner locus tags
BSTER_RS08105BSTER_RS08110
Partner old locus tags
BSTER_0629BSTER_0630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033499152.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DMN6Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DMN6_BIFADDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBSTER_RS08110Primary locus identifier stored in the genes table.
Old locus tagBSTER_0630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZQ01000008.1Sequence record reported by the local genomic context database.
Genomic interval788 186-790 792 nt2 607 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span787 361-790 792 ntGCF_000741415::NZ_JGZQ01000008.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741415::NZ_JGZQ01000008.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZQ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span787 361-790 792 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
787 361 nt790 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BSTER_RS08105GCF_000741415#BSTER_RS08105
RRNarL
787 361-788 110 nt · Reverse (-)
BSTER_RS08110GCF_000741415#BSTER_RS08110
HKClassicCurrent focus
788 186-790 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741415#BSTER_RS08110The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0461094
Simplified PFAM architecture for HKOC_0461094
PFAM domain coverage: 426 / 868 aa (49.1%)
1 aa868 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-148] | HisKA_3[241-303] | HATPase_c[352-439] | DUF7134[553-688]
- Domain count: 4
- Matched identifier: HKOC_0461094
- Positioned domains: DUF7134 10-148 ; HisKA_3 241-303 ; HATPase_c 352-439 ; DUF7134 553-688
Cluster members and taxonomy
Representative gene: GCF_000741415#BSTER_RS08110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 612 · GCF_000741415
AssemblyBifste · Contighaploid
Genome composition2 304 613 bp · 59,5% GCBifidobacterium adolescentis JCM 15918
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key