1 Response_reg#1
34-115 aa · 82 aa · 33.3% of protein
Raw token
Response_reg:34:0.000000341:115:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BADO_RS06660
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_000737885
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000737885#BADO_RS06660Stable P2CS identifier used across views.
GenomeGCF_000737885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 246 aa (65.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-221 aa · 79 aa · 32.1% of protein
Raw token
LytTR:143:2.39e-16:221:85:98- Raw architecture: Response_reg:34:0.000000341:115:84:111#LytTR:143:2.39e-16:221:85:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000737885::NZ_CP007443.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1561425-1562165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBADO_1300RefSeq proteinWP_038444787.1
Context group ID
GCF_000737885::NZ_CP007443.1::G00014Context members
BADO_RS06660
Partner locus tags
BADO_RS06660
Partner old locus tags
BADO_1300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_038444787.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBADO_RS06660Primary locus identifier stored in the genes table.
Old locus tagBADO_1300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007443.1Sequence record reported by the local genomic context database.
Genomic interval1 561 425-1 562 165 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 561 425-1 562 165 ntGCF_000737885::NZ_CP007443.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000737885::NZ_CP007443.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007443.1All displayed genes belong to this local TCS context.
Neighborhood span1 561 425-1 562 165 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 561 425 nt1 562 165 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BADO_RS06660GCF_000737885#BADO_RS06660
RRLytTRCurrent focus
1 561 425-1 562 165 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000737885#BADO_RS06660The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0770953
Simplified PFAM architecture for RROC_0770953
PFAM domain coverage: 180 / 246 aa (73.2%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[14-115] | LytTR[144-221]
- Domain count: 2
- Matched identifier: RROC_0770953
- Positioned domains: Response_reg 14-115 ; Response_reg 14-115 ; LytTR 144-221 ; LytTR 144-221
Cluster members and taxonomy
Representative gene: GCF_000737885#BADO_RS06660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_000737885
AssemblyASM73788v1 · Complete Genomehaploid
Genome composition2 203 222 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key