1 Response_reg#1
6-116 aa · 111 aa · 53.1% of protein
Raw token
Response_reg:6:1.94e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y692_RS04105
Response regulator NarL family
Bacillus anthracis str. Carbosap · GCF_000732465
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000732465#Y692_RS04105Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 209 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 26.3% of protein
Raw token
HTH_LUXR:149:1.5e-24:203:55:58- Raw architecture: Response_reg:6:1.94e-36:116:111:111#HTH_LUXR:149:1.5e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000732465::NZ_KL649661.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span772120-773860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagY692_04170RefSeq proteinWP_000694643.1
Context group ID
GCF_000732465::NZ_KL649661.1::G00008Context members
Y692_RS04105Y692_RS04110
Partner locus tags
Y692_RS04105Y692_RS04110
Partner old locus tags
Y692_04170Y692_04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694643.1Primary protein accession used for annex mappings.
UniProt accessionQ6HJ99Primary UniProt accession resolved in the annex database.
UniProt IDQ6HJ99_BACHKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY692_RS04105Primary locus identifier stored in the genes table.
Old locus tagY692_04170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KL649661.1Sequence record reported by the local genomic context database.
Genomic interval772 120-772 749 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span772 120-773 860 ntGCF_000732465::NZ_KL649661.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000732465::NZ_KL649661.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KL649661.1All displayed genes belong to this local TCS context.
Neighborhood span772 120-773 860 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
772 120 nt773 860 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Y692_RS04105GCF_000732465#Y692_RS04105
RRNarLCurrent focus
772 120-772 749 nt · Reverse (-)
Y692_RS04110GCF_000732465#Y692_RS04110
HKClassic
772 763-773 860 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS10895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2041082
Simplified PFAM architecture for RROC_2041082
PFAM domain coverage: 167 / 209 aa (79.9%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_2041082
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS10895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 245 029 · GCF_000732465
AssemblyASM73246v1 · Scaffoldhaploid
Genome composition5 407 671 bp · 35,0% GCBacillus anthracis str. Carbosap
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key