Gene detail

BL171B_RS01035

Histidine kinase, Classic

Bifidobacterium longum subsp. longum 17-1B · GCF_000730035

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength947 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000730035#BL171B_RS01035Stable P2CS identifier used across views.

GenomeGCF_000730035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_0332775Run 6 · 5 sequences · id 100% · cov 80% · representative

External referencesWP_032746454.1 · MIST4 BL171B_RS01035RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

KdpDHisKAHATPase_c

Protein length947 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage387 / 947 aa (40.9%)Merged over positioned domains only.

Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa947 aa

Domain-by-domain annotation3 items

1 KdpD#1

5-214 aa · 210 aa · 22.2% of protein

Raw tokenKdpD:5:1.62e-121:214:210:210

2 HisKA#2

644-710 aa · 67 aa · 7.1% of protein

Raw tokenHisKA:644:0.0000000013:710:67:64

3 HATPase_c#3

753-862 aa · 110 aa · 11.6% of protein

Raw tokenHATPase_c:753:1.03e-23:862:110:109

Raw architecture: KdpD:5:1.62e-121:214:210:210#HisKA:644:0.0000000013:710:67:64#HATPase_c:753:1.03e-23:862:110:109
Domain description: 1 KdpD,1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000730035::NZ_JNVZ01000016.1::G00014

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span80448-84000Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBL171B_05350RefSeq proteinWP_032746454.1

Context group IDGCF_000730035::NZ_JNVZ01000016.1::G00014

Context members

BL171B_RS01035BL171B_RS01030

Partner locus tags

BL171B_RS01035BL171B_RS01030

Partner old locus tags

BL171B_05350BL171B_05355

Partner protein IDs

WP_032746454.1 WP_013410856.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_032746454.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBL171B_RS01035Primary locus identifier stored in the genes table.

Old locus tagBL171B_05350Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JNVZ01000016.1Sequence record reported by the local genomic context database.

Genomic interval80 448-83 291 nt2 844 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span80 448-84 000 ntGCF_000730035::NZ_JNVZ01000016.1::G00014

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000730035::NZ_JNVZ01000016.1::G00014

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JNVZ01000016.1All displayed genes belong to this local TCS context.

Neighborhood span80 448-84 000 nt3 553 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

80 448 nt84 000 nt

+-BL171B_RS01035 BL171B_RS01030

Neighborhood gene cards

2 genes in the current local neighborhood.

BL171B_RS01035GCF_000730035#BL171B_RS01035

HKClassicCurrent focus

80 448-83 291 nt · Forward (+)

Old locus BL171B_05350RefSeq WP_032746454.1

Open current gene

BL171B_RS01030GCF_000730035#BL171B_RS01030

RROmpR

83 296-84 000 nt · Forward (+)

Old locus BL171B_05355RefSeq WP_013410856.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0332775HK

Run 65 sequencesid 100%cov 80%

PFAM KdpD + Usp + DUF4118 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_0332775Run 6 · HK · 5 sequences

Representative sequenceGCF_000730035#BL171B_RS01035The current gene is the representative for this cluster.

PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0332775

Simplified PFAM architecture for HKOC_0332775

PFAM domain coverage: 612 / 947 aa (64.6%)

1 aa947 aa

KdpDUspDUF4118HisKAHATPase_c

Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
Raw architecture: KdpD[5-214] | Usp[235-358] | DUF4118[388-491] | HisKA[644-709] | HATPase_c[754-861]
Domain count: 5
Matched identifier: HKOC_0332775
Positioned domains: KdpD 5-214 ; Usp 235-358 ; DUF4118 388-491 ; HisKA 644-709 ; HATPase_c 754-861

Cluster members and taxonomy

Representative gene: GCF_000730035#BL171B_RS01035

Displayed with 5 columns and 10 rows per page from the local display config.

Showing members 1 to 5 over 5 total members. Page 1 / 1.

GCF_000730035#BL171B_RS01035 (representative)

BL171B_RS01035 · HK · Classic

RefSeq: WP_032746454.1

GCF_001892965#B0296_RS04585

B0296_RS04585 · HK · Classic

RefSeq: WP_032746454.1

GCF_004334205#MCC10072_RS04955

MCC10072_RS04955 · HK · Classic