1 Response_reg#1
48-153 aa · 106 aa · 38.3% of protein
Raw token
Response_reg:48:3.62e-29:153:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG47_RS06015
Response regulator OmpR family
Clostridioides difficile · GCF_000632735
ClassRRTypeOmpRLength277 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000632735#BG47_RS06015Stable P2CS identifier used across views.
GenomeGCF_000632735Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length277 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 277 aa (66.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa277 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
196-272 aa · 77 aa · 27.8% of protein
Raw token
Trans_reg_C:196:3.37e-28:272:77:77- Raw architecture: Response_reg:48:3.62e-29:153:107:111#Trans_reg_C:196:3.37e-28:272:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000632735::NZ_KK213931.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span92844-93677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG47_09345RefSeq proteinWP_161804568.1
Context group ID
GCF_000632735::NZ_KK213931.1::G00040Context members
BG47_RS06015
Partner locus tags
BG47_RS06015
Partner old locus tags
BG47_09345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161804568.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG47_RS06015Primary locus identifier stored in the genes table.
Old locus tagBG47_09345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KK213931.1Sequence record reported by the local genomic context database.
Genomic interval92 844-93 677 nt834 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 844-93 677 ntGCF_000632735::NZ_KK213931.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000632735::NZ_KK213931.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KK213931.1All displayed genes belong to this local TCS context.
Neighborhood span92 844-93 677 nt834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 844 nt93 677 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BG47_RS06015GCF_000632735#BG47_RS06015
RROmpRCurrent focus
92 844-93 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449045#QCI_RS16735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0601097
Simplified PFAM architecture for RROC_0601097
PFAM domain coverage: 186 / 277 aa (67.1%)
1 aa277 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[48-156] | Trans_reg_C[196-272]
- Domain count: 2
- Matched identifier: RROC_0601097
- Positioned domains: Response_reg 48-156 ; Response_reg 48-156 ; Trans_reg_C 196-272 ; Trans_reg_C 196-272
Cluster members and taxonomy
Representative gene: GCF_000449045#QCI_RS16735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000632735
AssemblyP1 · Scaffoldhaploid
Genome composition4 268 551 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key