1 Response_reg#1
1-75 aa · 75 aa · 37.9% of protein
Raw token
Response_reg:1:1.13e-18:75:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BG47_RS00005
Response regulator OmpR family
Clostridioides difficile · GCF_000632735
ClassRRTypeOmpRLength198 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000632735#BG47_RS00005Stable P2CS identifier used across views.
GenomeGCF_000632735Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length198 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 198 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa198 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
120-195 aa · 76 aa · 38.4% of protein
Raw token
Trans_reg_C:120:2.5e-30:195:77:77- Raw architecture: Response_reg:1:1.13e-18:75:76:111#Trans_reg_C:120:2.5e-30:195:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000632735::NZ_KK213999.1::G00061
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42-639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBG47_00030RefSeq proteinWP_032509982.1
Context group ID
GCF_000632735::NZ_KK213999.1::G00061Context members
BG47_RS00005
Partner locus tags
BG47_RS00005
Partner old locus tags
BG47_00030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032509982.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBG47_RS00005Primary locus identifier stored in the genes table.
Old locus tagBG47_00030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KK213999.1Sequence record reported by the local genomic context database.
Genomic interval42-639 nt598 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42-639 ntGCF_000632735::NZ_KK213999.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000632735::NZ_KK213999.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KK213999.1All displayed genes belong to this local TCS context.
Neighborhood span42-639 nt598 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 nt639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BG47_RS00005GCF_000632735#BG47_RS00005
RROmpRCurrent focus
42-639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000632735#BG47_RS00005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2149124
Simplified PFAM architecture for RROC_2149124
PFAM domain coverage: 147 / 198 aa (74.2%)
1 aa198 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-74] | Trans_reg_C[121-194]
- Domain count: 2
- Matched identifier: RROC_2149124
- Positioned domains: Response_reg 2-74 ; Response_reg 2-74 ; Trans_reg_C 121-194 ; Trans_reg_C 121-194
Cluster members and taxonomy
Representative gene: GCF_000632735#BG47_RS00005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000632735
AssemblyP1 · Scaffoldhaploid
Genome composition4 268 551 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key