1 Response_reg#1
1-90 aa · 90 aa · 98.9% of protein
Raw token
Response_reg:1:1.26e-24:90:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P246_RS11250
Response regulator, CheY family
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-28534 · GCF_000628925
ClassRRTypeCheYLength91 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_000628925#P246_RS11250Stable P2CS identifier used across views.
GenomeGCF_000628925Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
External referencesMIST4 P246_RS11250MIST4
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length91 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage90 / 91 aa (98.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa91 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:1.26e-24:90:91:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP246_RS11250Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008985#FTT_RS10205Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2473732
Simplified PFAM architecture for RROC_2473732
PFAM domain coverage: 89 / 91 aa (97.8%)
1 aa91 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-90]
- Domain count: 1
- Matched identifier: RROC_2473732
- Positioned domains: Response_reg 2-90 ; Response_reg 2-90
Cluster members and taxonomy
Representative gene: GCF_000008985#FTT_RS10205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 341 656 · GCF_000628925
AssemblyFran_tula_Schu_S4_NR-28534_V1 · Contighaploid
Genome composition1 892 972 bp · 32,5% GCFrancisella tularensis subsp. tularensis str. SCHU S4 substr. NR-28534
Signal transduction countsGenes 5 · HK 2 · RR 3CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key