1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.000000278:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y779_RS0109780
Histidine kinase, Classic
Clostridioides difficile 5.3 · GCF_000586575
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000586575#Y779_RS0109780Stable P2CS identifier used across views.
GenomeGCF_000586575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:5.39e-24:341:101:109- Raw architecture: HisKA:124:0.000000278:189:66:64#HATPase_c:241:5.39e-24:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000586575::NZ_AZSH01000011.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1051021-1052728Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000586575::NZ_AZSH01000011.1::G00035Context members
Y779_RS0109775Y779_RS0109780
Partner locus tags
Y779_RS0109775Y779_RS0109780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366760.1Primary protein accession used for annex mappings.
UniProt accessionA0A069ALH3Primary UniProt accession resolved in the annex database.
UniProt IDA0A069ALH3_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY779_RS0109780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AZSH01000011.1Sequence record reported by the local genomic context database.
Genomic interval1 051 697-1 052 728 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 051 021-1 052 728 ntGCF_000586575::NZ_AZSH01000011.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000586575::NZ_AZSH01000011.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AZSH01000011.1All displayed genes belong to this local TCS context.
Neighborhood span1 051 021-1 052 728 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 051 021 nt1 052 728 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Y779_RS0109775GCF_000586575#Y779_RS0109775
RROmpR
1 051 021-1 051 707 nt · Forward (+)
Y779_RS0109780GCF_000586575#Y779_RS0109780
HKClassicCurrent focus
1 051 697-1 052 728 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS09860Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827960
Simplified PFAM architecture for HKOC_2827960
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827960
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS09860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 440 056 · GCF_000586575
AssemblyWHS13_S12 · Contighaploid
Genome composition4 009 318 bp · 28,5% GCClostridioides difficile 5.3
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key