1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:5.52e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN165_RS01935
Response regulator OmpR family
Clostridioides difficile E1 · GCF_000582865
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000582865#BN165_RS01935Stable P2CS identifier used across views.
GenomeGCF_000582865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:4.48e-28:227:77:77- Raw architecture: Response_reg:4:5.52e-33:112:111:111#Trans_reg_C:151:4.48e-28:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000582865::NZ_HF927495.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20770-22905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN165_230025RefSeq proteinWP_003417590.1
Context group ID
GCF_000582865::NZ_HF927495.1::G00004Context members
BN165_RS01930BN165_RS01935
Partner locus tags
BN165_RS01930BN165_RS01935
Partner old locus tags
BN165_230024BN165_230025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417590.1Primary protein accession used for annex mappings.
UniProt accessionD5Q046Primary UniProt accession resolved in the annex database.
UniProt IDD5Q046_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN165_RS01935Primary locus identifier stored in the genes table.
Old locus tagBN165_230025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927495.1Sequence record reported by the local genomic context database.
Genomic interval22 213-22 905 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 770-22 905 ntGCF_000582865::NZ_HF927495.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000582865::NZ_HF927495.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927495.1All displayed genes belong to this local TCS context.
Neighborhood span20 770-22 905 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 770 nt22 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN165_RS01930GCF_000582865#BN165_RS01930
HKClassic
20 770-22 194 nt · Reverse (-)
BN165_RS01935GCF_000582865#BN165_RS01935
RROmpRCurrent focus
22 213-22 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200138
Simplified PFAM architecture for RROC_1200138
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200138
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202390
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 308 total members. Page 1 / 7.
GCF_000155065#QAE_RS0202390 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 225 722 · GCF_000582865
AssemblyE1 · Scaffoldhaploid
Genome composition3 945 725 bp · 29,0% GCClostridioides difficile E1
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key